{
  "_id": "6a2538404b233be198397f79",
  "Package": "FAIRmaterials",
  "Title": "Ontology Tools with Data FAIRification in Development",
  "Version": "0.4.2.1",
  "Authors@R": "c(\nperson(\ngiven = c(\"Jonathan\", \"E\"),\nfamily = \"Gordon\",\nrole = c(\"aut\"),\nemail = \"jgordon5@bowdoin.edu\",\ncomment = c(ORCID = \"0009-0007-5958-7386\")\n),\nperson(\ngiven = \"Alexander\",\nfamily = \"Harding Bradley\",\nrole = c(\"aut\"),\nemail = \"ach159@case.edu\",\ncomment = c(ORCID = \"0009-0000-2917-773X\")\n),\nperson(\ngiven = \"Priyan\",\nfamily = \"Rajamohan\",\nrole = c(\"aut\"),\nemail = \"bxr261@case.edu\",\ncomment = c(ORCID = \"0009-0003-5326-1706\")\n),\nperson(\ngiven = \"Nathaniel\",\nfamily = \"Hahn\",\nrole = c(\"aut\"),\nemail = \"nrh51@case.edu\"\n),\nperson(\ngiven = \"Kiefer\",\nfamily = \"Lin\",\nrole = c(\"aut\"),\nemail = \"kyl29@case.edu\"\n),\nperson(\ngiven = \"Arafath\",\nfamily = \"Nihar\",\nrole = c(\"aut\"),\nemail = \"arafath.nihar@case.edu\",\ncomment = c(ORCID = \"0000-0003-4826-290X\")\n),\nperson(\ngiven = \"Hayden\",\nfamily = \"Cadwell\",\nrole = c(\"aut\"),\nemail = \"hwc11@case.edu\"\n),\nperson(\ngiven = \"Jiana\",\nfamily = \"Kambo\",\nrole = c(\"aut\"),\nemail = \"jxk1403@case.edu\"\n),\nperson(\ngiven = \"Jayvic\",\nfamily = \"Jimenez\",\nrole = c(\"aut\"),\ncomment = c(ORCID = \"0000-0002-2342-5648\")\n),\nperson(\ngiven = c(\"Kristen\", \"J\"),\nfamily = \"Hernandez\",\nrole = c(\"aut\"),\nemail = \"kjh125@case.edu\",\ncomment = c(ORCID = \"0000-0001-6139-1218\")\n),\nperson(\ngiven = \"Hein\",\nfamily = \"Htet-Aung\",\nrole = c(\"aut\"),\nemail = \"hxh483@case.edu\",\ncomment = c(ORCID = \"0000-0002-8191-8213\")\n),\nperson(\ngiven = \"Brian\",\nfamily = \"Giera\",\nrole = c(\"aut\"),\nemail = \"giera1@llnl.gov\",\ncomment = c(ORCID = \"0000-0001-6543-7498\")\n),\nperson(\ngiven = \"Weiqi\",\nfamily = \"Yue\",\nrole = c(\"aut\"),\nemail = \"wxy215@case.edu\",\ncomment = c(ORCID = \"0000-0002-3253-7991\")\n),\nperson(\ngiven = \"Mohommad\",\nfamily = \"Redad Mehdi\",\nrole = c(\"aut\"),\nemail = \"mxm1684@case.edu\",\ncomment = c(ORCID = \"0000-0002-0593-5222\")\n),\nperson(\ngiven = \"Finley\",\nfamily = \"Holt\",\nrole = c(\"aut\"),\nemail = \"frh10@case.edu\"\n),\nperson(\ngiven = \"Quynh\",\nfamily = \"Tran\",\nrole = c(\"aut\"),\nemail = \"qdt@case.edu\",\ncomment = c(ORCID = \"0009-0006-4025-1834\")\n),\nperson(\ngiven = \"Gabriel\",\nfamily = \"Ponon\",\nrole = c(\"aut\"),\nemail = \"gop2@case.edu\",\ncomment = c(ORCID = \"0000-0002-9366-6199\")\n),\nperson(\ngiven = \"Daniel\",\nfamily = \"Savage\",\nrole = c(\"aut\"),\nemail = \"dansavage@lanl.gov\",\ncomment = c(ORCID = \"0000-0001-9973-2030\")\n),\nperson(\ngiven = \"Donald\",\nfamily = \"Brown\",\nrole = c(\"aut\"),\nemail = \"dbrown@lanl.gov\"\n),\nperson(\ngiven = \"Jarod\",\nfamily = \"Kaltenbaugh\",\nrole = c(\"aut\"),\nemail = \"jkaltenbaugh@knights.ucf.edu\",\ncomment = c(ORCID = \"0009-0007-4576-7714\")\n),\nperson(\ngiven = \"Kush\",\nfamily = \"Havinal\",\nrole = c(\"aut\"),\nemail = \"ku769704@ucf.edu \"\n),\nperson(\ngiven = \"Nicholas\",\nfamily = \"Gray\",\nrole = c(\"aut\"),\nemail = \"ba566783@ucf.edu\"\n),\nperson(\ngiven = \"Max\",\nfamily = \"Liggett\",\nrole = c(\"aut\"),\nemail = \"mal252@case.edu\"\n),\nperson(\ngiven = c(\"Benjamin\", \"G\"),\nfamily = \"Pierce\",\nrole = c(\"aut\"),\nemail = \"bgp12@case.edu\",\ncomment = c(ORCID = \"0000-0002-9080-4584\")\n),\nperson(\ngiven = \"Raymond\",\nfamily = \"Wieser\",\nrole = c(\"aut\"),\nemail = \"rxw497@case.edu\",\ncomment = c(ORCID = \"0000-0003-1531-6430\")\n),\nperson(\ngiven = \"Yangxin\",\nfamily = \"Fan\",\nrole = c(\"aut\"),\ncomment = c(ORCID = \"0000-0003-1728-9560\")\n),\nperson(\ngiven = \"Tommy\",\nfamily = \"Ciardi\",\nrole = c(\"aut\"),\nemail = \"tommy.ciardi@case.edu\"\n),\nperson(\ngiven = c(\"Olatunde\", \"J\"),\nfamily = \"Akanbi\",\nrole = c(\"aut\"),\nemail = \"olatunde.akanbi@case.edu\",\ncomment = c(ORCID = \"0000-0001-7719-2619\")\n),\nperson(\ngiven = \"Hadiza\",\nfamily = \"Iawal\",\nrole = c(\"aut\"),\nemail = \"mxs2087@case.edu\",\ncomment = c(ORCID = \"0000-0001-5086-2344\")\n),\nperson(\ngiven = \"Will\",\nfamily = c(\"Oltjen\"),\nrole = c(\"aut\"),\nemail = \"william.oltjen@case.edu\",\ncomment = c(ORCID = \"0000-0003-0380-1033\")\n),\nperson(\ngiven = \"Maliesha\",\nfamily = \"Kalutotage\",\nrole = c(\"aut\"),\nemail = \"aml334@case.edu\",\ncomment = c(ORCID = \"0009-0009-6440-8180\")\n),\nperson(\ngiven = \"Antony\",\nfamily = \"Lino\",\nrole = c(\"aut\"),\nemail = \"aml334@case.edu\"\n),\nperson(\ngiven = \"Van\",\nfamily = \"Tran\",\nrole = c(\"aut\"),\nemail = \"vxt101@case.edu\",\ncomment = c(ORCID = \"0009-0008-4355-0543\")\n),\nperson(\ngiven = \"Mingjian\",\nfamily = \"Lu\",\nrole = c(\"aut\"),\nemail = \"mingjian.lu@case.edu\"\n),\nperson(\ngiven = \"Xuanji\",\nfamily = \"Yu\",\nrole = c(\"aut\"),\nemail = \"xuanji.yu@case.edu\",\ncomment = c(ORCID = \"0000-0003-1967-3769\")\n),\nperson(\ngiven = \"Liangyi\",\nfamily = \"Huang\",\nrole = c(\"aut\"),\nemail = \"liangyi.huang@case.edu\",\ncomment = c(ORCID = \"0000-0003-0845-3293\")\n),\nperson(\ngiven = \"Zelin\",\nfamily = \"Li\",\nrole = c(\"aut\"),\nemail = \"zelin.li@case.edu\",\ncomment = c(ORCID = \"0000-0002-6287-3697\")\n),\nperson(\ngiven = \"Abhishek\",\nfamily = \"Daundkar\",\nrole = c(\"aut\"),\nemail = \"abhishek.daundkar@case.edu\"\n),\nperson(\ngiven = \"Hope\",\nfamily = \"Omodolor\",\nrole = c(\"aut\"),\nemail = \"hope.omodolor@case.edu\",\ncomment = c(ORCID = \"0009-0005-7842-406X\")\n),\nperson(\ngiven = \"Deepa\",\nfamily = \"Bhuvanagiri\",\nrole = c(\"aut\"),\nemail = \"deepa.bhuvanagiri@case.edu\",\ncomment = c(ORCID = \"0000-0002-5896-545X\")\n),\nperson(\ngiven = \"Mirra\",\nfamily = \"Rasmussen\",\nrole = c(\"aut\"),\nemail = \"mirra.rasmussen@case.edu\"\n),\nperson(\ngiven = \"Sameera\",\nfamily = \"Nalin-Venkat\",\nrole = c(\"aut\"),\nemail = \"sameera.nalinvenkat@case.edu\",\ncomment = c(ORCID = \"0000-0002-9114-4602\")\n),\nperson(\ngiven = \"Tian\",\nfamily = \"Wang\",\nrole = c(\"aut\"),\nemail = \"tian.wang@case.edu\",\ncomment = c(ORCID = \"0000-0002-6088-4405\")\n),\nperson(\ngiven = \"Rounak\",\nfamily = \"Chawla\",\nrole = c(\"aut\"),\nemail = \"rounak.chawla@case.edu\"\n),\nperson(\ngiven = \"Leean\",\nfamily = \"Jo\",\nrole = c(\"aut\"),\nemail = \"leean.jo@case.edu\",\ncomment = c(ORCID = \"0000-0001-7026-3779\")\n),\nperson(\ngiven = c(\"Jeffrey\", \"M\"),\nfamily = \"Yarus\",\nrole = c(\"aut\"),\nemail = \"jmy41@case.edu\",\ncomment = c(ORCID = \"0000-0002-9331-9568\")\n),\nperson(\ngiven = \"Kristopher O\",\nfamily = \"Davis\",\nrole = c(\"aut\"),\nemail = \"kristopher.davis@ucf.edu\",\ncomment = c(ORCID = \"0000-0002-5772-6254\")\n),\nperson(\ngiven = \"Mengjie\",\nfamily = \"Li\",\nrole = c(\"aut\"),\nemail = \"mengjie.li@ucf.edu\",\ncomment = c(ORCID = \"0000-0002-9531-2474\")\n),\nperson(\ngiven = \"Yinghui\",\nfamily = \"Wu\",\nrole = c(\"aut\"),\nemail = \"yinghui.wu@case.edu\",\ncomment = c(ORCID = \"0000-0003-3991-5155\")\n),\nperson(\ngiven = c(\"Pawan\", \"K\"),\nfamily = \"Tripathi\",\nrole = c(\"aut\"),\nemail = \"pkt19@case.edu\",\ncomment = c(ORCID = \"0000-0002-8604-7744\")\n),\nperson(\ngiven = c(\"Laura\", \"S\"),\nfamily = \"Bruckman\",\nrole = c(\"aut\"),\nemail = \"laura.bruckman@case.edu\",\ncomment = c(ORCID = \"0000-0003-1271-1072\")\n),\nperson(\ngiven = c(\"Erika\", \"I\"),\nfamily = \"Barcelos\",\nrole = c(\"aut\"),\nemail = \"erika.barcelos@case.edu\",\ncomment = c(ORCID = \"0000-0002-9273-8488\")\n),\nperson(\ngiven = c(\"Roger\", \"H\"),\nfamily = \"French\",\nrole = c(\"aut\", \"cre\", \"cph\"),\nemail = \"roger.french@case.edu\",\ncomment = c(ORCID = \"0000-0002-6162-0532\")))",
  "Description": "Translates several CSV files with ontological terms and\ncorresponding data into RDF triples. These RDF triples are\nstored in OWL and JSON-LD files, facilitating data\naccessibility, interoperability, and knowledge unification. The\ntriples are also visualized in a graph saved as an SVG. The\ninput CSVs must be formatted with a template from a public\nGoogle Sheet; see README or vignette for more information. This\nis a tool is used by the SDLE Research Center at Case Western\nReserve University to create and visualize material science\nontologies, and it includes example ontologies to demonstrate\nits capabilities. This work was supported by the U.S.\nDepartment of Energy’s Office of Energy Efficiency and\nRenewable Energy (EERE) under Solar Energy Technologies Office\n(SETO) Agreement Numbers E-EE0009353 and DE-EE0009347,\nDepartment of Energy (National Nuclear Security Administration)\nunder Award Number DE-NA0004104 and Contract number B647887,\nand U.S. National Science Foundation Award under Award Number\n2133576.",
  "License": "BSD_3_clause + file LICENSE",
  "Encoding": "UTF-8",
  "RoxygenNote": "7.3.1",
  "Config/testthat/edition": "3",
  "VignetteBuilder": "knitr",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-06-07 09:18:17 UTC",
    "User": "root"
  },
  "Author": "Jonathan E Gordon [aut]\n(<https://orcid.org/0009-0007-5958-7386>), Alexander Harding\nBradley [aut] (<https://orcid.org/0009-0000-2917-773X>), Priyan\nRajamohan [aut] (<https://orcid.org/0009-0003-5326-1706>),\nNathaniel Hahn [aut], Kiefer Lin [aut], Arafath Nihar [aut]\n(<https://orcid.org/0000-0003-4826-290X>), Hayden Cadwell\n[aut], Jiana Kambo [aut], Jayvic Jimenez [aut]\n(<https://orcid.org/0000-0002-2342-5648>), Kristen J Hernandez\n[aut] (<https://orcid.org/0000-0001-6139-1218>), Hein Htet-Aung\n[aut] (<https://orcid.org/0000-0002-8191-8213>), Brian Giera\n[aut] (<https://orcid.org/0000-0001-6543-7498>), Weiqi Yue\n[aut] (<https://orcid.org/0000-0002-3253-7991>), Mohommad Redad\nMehdi [aut] (<https://orcid.org/0000-0002-0593-5222>), Finley\nHolt [aut], Quynh Tran [aut]\n(<https://orcid.org/0009-0006-4025-1834>), Gabriel Ponon [aut]\n(<https://orcid.org/0000-0002-9366-6199>), Daniel Savage [aut]\n(<https://orcid.org/0000-0001-9973-2030>), Donald Brown [aut],\nJarod Kaltenbaugh [aut]\n(<https://orcid.org/0009-0007-4576-7714>), Kush Havinal [aut],\nNicholas Gray [aut], Max Liggett [aut], Benjamin G Pierce [aut]\n(<https://orcid.org/0000-0002-9080-4584>), Raymond Wieser [aut]\n(<https://orcid.org/0000-0003-1531-6430>), Yangxin Fan [aut]\n(<https://orcid.org/0000-0003-1728-9560>), Tommy Ciardi [aut],\nOlatunde J Akanbi [aut]\n(<https://orcid.org/0000-0001-7719-2619>), Hadiza Iawal [aut]\n(<https://orcid.org/0000-0001-5086-2344>), Will Oltjen [aut]\n(<https://orcid.org/0000-0003-0380-1033>), Maliesha Kalutotage\n[aut] (<https://orcid.org/0009-0009-6440-8180>), Antony Lino\n[aut], Van Tran [aut]\n(<https://orcid.org/0009-0008-4355-0543>), Mingjian Lu [aut],\nXuanji Yu [aut] (<https://orcid.org/0000-0003-1967-3769>),\nLiangyi Huang [aut] (<https://orcid.org/0000-0003-0845-3293>),\nZelin Li [aut] (<https://orcid.org/0000-0002-6287-3697>),\nAbhishek Daundkar [aut], Hope Omodolor [aut]\n(<https://orcid.org/0009-0005-7842-406X>), Deepa Bhuvanagiri\n[aut] (<https://orcid.org/0000-0002-5896-545X>), Mirra\nRasmussen [aut], Sameera Nalin-Venkat [aut]\n(<https://orcid.org/0000-0002-9114-4602>), Tian Wang [aut]\n(<https://orcid.org/0000-0002-6088-4405>), Rounak Chawla [aut],\nLeean Jo [aut] (<https://orcid.org/0000-0001-7026-3779>),\nJeffrey M Yarus [aut]\n(<https://orcid.org/0000-0002-9331-9568>), Kristopher O Davis\n[aut] (<https://orcid.org/0000-0002-5772-6254>), Mengjie Li\n[aut] (<https://orcid.org/0000-0002-9531-2474>), Yinghui Wu\n[aut] (<https://orcid.org/0000-0003-3991-5155>), Pawan K\nTripathi [aut] (<https://orcid.org/0000-0002-8604-7744>), Laura\nS Bruckman [aut] (<https://orcid.org/0000-0003-1271-1072>),\nErika I Barcelos [aut]\n(<https://orcid.org/0000-0002-9273-8488>), Roger H French [aut,\ncre, cph] (<https://orcid.org/0000-0002-6162-0532>)",
  "Maintainer": "Roger H French <roger.french@case.edu>",
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  "Repository": "https://cwru-sdle.r-universe.dev",
  "Date/Publication": "2024-06-28 02:43:58 UTC",
  "RemoteUrl": "https://github.com/cran/FAIRmaterials",
  "RemoteRef": "HEAD",
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  "_created": "2026-06-07T09:18:17.000Z",
  "_published": "2026-06-07T09:22:08.948Z",
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  "_buildurl": "https://github.com/r-universe/cwru-sdle/actions/runs/27088360921",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/cran/FAIRmaterials",
  "_commit": {
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    "author": "Roger H French <roger.french@case.edu>",
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  "_maintainer": {
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      "package": "DiagrammeR",
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  "_owner": "cran",
  "_selfowned": false,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 0,
  "_userbio": {
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    "type": "organization",
    "name": "CWRU SDLE"
  },
  "_downloads": {
    "count": 607,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/FAIRmaterials"
  },
  "_searchresults": 14,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/FAIRmaterials.html",
    "manual.pdf"
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  "_realowner": "cwru-sdle",
  "_cranurl": false,
  "_releases": [
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      "version": "0.0.2",
      "date": "2021-09-14"
    },
    {
      "version": "0.1.0",
      "date": "2023-01-06"
    },
    {
      "version": "0.2.0",
      "date": "2023-01-16"
    },
    {
      "version": "0.3.0",
      "date": "2023-02-11"
    },
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      "version": "0.4.1",
      "date": "2023-08-09"
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      "version": "0.4.2",
      "date": "2024-06-24"
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      "version": "0.4.2.1",
      "date": "2024-06-27"
    }
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  "_exports": [
    "process_ontology_files"
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  "_help": [
    {
      "page": "process_ontology_files",
      "title": "Process Ontology CSV Files",
      "topics": [
        "process_ontology_files"
      ]
    }
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    "tibble",
    "tidyr",
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    "tinytex",
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    "vctrs",
    "viridisLite",
    "visNetwork",
    "vroom",
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    "xfun",
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  ],
  "_vignettes": [
    {
      "source": "FAIRmaterials.Rmd",
      "filename": "FAIRmaterials.html",
      "title": "FAIRmaterials",
      "engine": "knitr::rmarkdown",
      "headings": [
        "What is FAIRmaterials and what does it do?",
        "How to use FAIR CSV template:",
        "Example of XRay ontology FAIR CSV sheet",
        "Install and load the package",
        "Running the default 'process_ontology_files' function:",
        "PV ontology sheets:",
        "turtle/owl output from PV Module in R:",
        "json-ld output from PV Module in R:",
        "HTML output",
        "turtle/owl output from PV Module:",
        "json-ld output from PV Module:",
        "XRay Sample ontology sheets:",
        "turtle/owl output from XRay Sample in R:",
        "json-ld output from XRay Sample in R:",
        "Removing values from visualization in R",
        "Removing values from visualization in Python",
        "Attempting to add external ontology information in R:",
        "For PV Module:",
        "For XRay Sample:",
        "turtle/owl output from XRay Sample:",
        "Attempting to add external ontology information in Python:",
        "Merging two ontologies and specifying some of the metadata:",
        "Example turtle/owl output from merged ontology:",
        "Acknowledgment:"
      ],
      "created": "2024-06-25 02:43:17",
      "modified": "2024-06-28 02:43:58",
      "commits": 2
    }
  ],
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